The SBGN symbol of the month project is relaunched on http://sbgn.org. SEMS memeber Vasundra Touré is currently responsible for the project. Symbol of the month for January is the SBGN compartment.
Continue readingde.NBI action at COMBINE 2015 tutorial
At this year’s COMBINE tutorial, a satellite to the ICSB 2015, we taught different tools and possibilities to prepare model-based results for publication in public repositories such as BioModels and PMR2. We also encouraged people to try out our own model management solutions, particularly BiVeS, MaSyMoS, M2CAT and CAT. The slides for the introductory talk […]
Continue readingCAT goes ICSB
We’ll be joining the COMBINE team at ICSB 2015 as tutors this year. During the COMBINE tutorial on modeling and simulation tools and standards, we’ll be giving a talk about the COMBINE Archive and the COMBINE Archive Web Tools. The talk will be followed by a hands-on session in the afternoon. Date: 25th November, 2015. […]
Continue readingWelcome to our new team member Vasundra
Vasundra Touré joined our team recently on the SBGN-ED+ project. She will work on SBGN, libSBGN and on the SBGN-ED software which is part of VANTED. The project runs until end of 2016. Vasundra is currently on a research stay at Monash University where she works with Prof. Falk Schreiber and Dr. Tobias Czauderna.
Continue readingWebCAT exports Research Objects
We are happy to announce that the CombineArchive WebInterface is now able to export Research Objects! You just need to click the [Export RO] button, as shown in the image. That’s been made possible with the help of CaRo and the CaRoWeb tools.
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CaRoWeb: now including ?remote= and redirect=checkout
We just updated the CaRoWeb interface. This update brings two brand-new options to the conversion requestions: ?remote= downloads containers from other web servers In addition to the famous HTTP-POST-conversion you can now supply a link to a container that’s to be converted, e.g.: 1curl ‘http://SERVER/caro?remote=http://scripts.sems.uni-rostock.de/getshowcase.php’ the value supplied to the ?remote= gets interpreted as a […]
Continue readingSEMS group retreat 2015
We’re on a retreat in lovely Greifswald this week. Besides all the social and group building activities, we evaluate and discuss possibilities to provide metadata for computational models and COMBINE Archives. The idea is to harmonise current approaches to metadata annotation in SBML, CellML, COMBINE Archive, etc.
Continue readingSEMS’ Gallery
Yeah! SEMS now has a gallery :) At gallery.sems.uni-rostock.de you’ll find images, logos, and figures that we created. If you click on an image you’ll get more information about it. The number of images is currently fairly small, but will hopefully be increasing in the future.
Continue readingVolkswagen Foundation funds second Whole Cell meeting in Salt Lake City
The Volkswagen Foundation supports a follow-up meeting of the Whole Cell Summer School we ran in Rostock earlier this year. The Whole Cell 2 will take place as a satellite meeting to the COMBINE 2015 meeting in Salt Lake City (US), October 10-11, 2015. We will be able to fully fund about 10 students from […]
Continue readingRegistration to DCite is open
We are co-organising a workshop on Citeable data and Reproducible models, DCite, in September this year in Rostock-Warnemünde. The workshop brings together scientists who wish to learn about open science, open data, and how to make their research results reproducible. In the mornings, invited key note speakers will talk about programs and initiatives such as […]
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