Ok guys, $Stuff is now distributed around different servers, domains, services, people… Here are some links for external users to find the resources: SEMS web page The wordpress site has been serialised to static web content and is now available through sems.bio.informatik.uni-rostock.de. All sems.uni-rostock.de/.* links should send proper HTTP redirects, so your browser will automatically […]
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The SEMS project came to an end
As you may have guessed from this website’s quiet news section: The SEMS project came to an end. Tom was bravely holding the fort, spending the last few cents of our budget in July 2017. But do not worry, not all is lost! SEMS peeps will continue their fights for improved management of computational models […]
Continue readingA container for the CombineArchive Web interface
Following the BiVeS-WebApp example, the CombineArchive Web interface jumps onto the Docker hype as well! It is now also available as a container from the Docker hub and we will automatically create new versions of the image with every release of the application. To run the application just call the following command: 1docker run -it […]
Continue readingBiVeS-WebApp as a Docker image
Today we compiled the BiVeS web application into a Docker image. Using Docker it is very simple to run the application on your desktop, your server, your cloud… The Docker image is available from the Docker Hub as binfalse/bives-webapp. To pull the latest version of the BiVeS web application just call 1docker pull binfalse/bives-webapp Running […]
Continue readingNew paper on Functional Curation
Martin Scharm’s paper about the Cardiac Electrophysiology Web Lab, work done during his research stay at the University of Oxford, is published in the current issue of the Biophysical Journal!
Continue readingWebCAT exports Research Objects
We are happy to announce that the CombineArchive WebInterface is now able to export Research Objects! You just need to click the [Export RO] button, as shown in the image. That’s been made possible with the help of CaRo and the CaRoWeb tools.
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CaRoWeb: now including ?remote= and redirect=checkout
We just updated the CaRoWeb interface. This update brings two brand-new options to the conversion requestions: ?remote= downloads containers from other web servers In addition to the famous HTTP-POST-conversion you can now supply a link to a container that’s to be converted, e.g.: 1curl ‘http://SERVER/caro?remote=http://scripts.sems.uni-rostock.de/getshowcase.php’ the value supplied to the ?remote= gets interpreted as a […]
Continue readingSEMS’ Gallery
Yeah! SEMS now has a gallery :) At gallery.sems.uni-rostock.de you’ll find images, logos, and figures that we created. If you click on an image you’ll get more information about it. The number of images is currently fairly small, but will hopefully be increasing in the future.
Continue readingMartin visits the group of Carole Goble in Manchester
Martin Scharm is currently in Manchester to visit the group of Carole Goble. His stay is funded by the HERMES research funding program at the University of Rostock. Martins goals for the coming 8 weeks are to establish a closer collaboration with Manchester and to develop a grant proposal together with Mrs. Goble’s group. Martin […]
Continue readingBiVeS in PMR2
One of our main goals at HARMONY 2015 was to improve the version control of PMR2, as we described earlier. During HARMONY, Tommy Yu, main developer of PMR2, and Martin Scharm already achieved preliminary results. Today Tommy sent us the first version of BiVeS integrated into the CellML model repository: go here: http://staging.physiomeproject.org/workspace/beeler_reuter_1977/file/cb090c96a2ce627457b14def4910ac39219b8340/beeler_reuter_1977.cellml Then click […]
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