Management System for Models and Simulations

MaSyMoS is a Neo4J instance containing SBML and CellML Models as well as simulation descriptions in SED-ML format. In addition, MaSyMoS contains bio-ontologies that are most frequently used for the annotation of models, i.e., GO, ChEBI, SBO, KiSAO.

All data is represented as a Graph and can be queried using Cypher. A description of the underlying database is available from our latest publication in Oxford DATABASE.

Web Interface

To try the queries described in the paper we provide access to the Neo4J Cypher endpoint:

User: reviewer

Password: henkeletal

Every day at 2am (UTC+01:00) the database will be replaced by a backup, all changes are lost.

Find more Examples and implementation details.

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Ron Henkel