As the SEMS team is fighting for free and open software we obviously avoid using proprietary products. Thus, all our machines run GNU/Linux based operating systems, specifically Debian. The Debian project just released a new stable version: code name “Jessie”. We just updated all our machines to the latest Debian release and want to take […]
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Bachelor Thesis completed: Classifying reactions of computational models
Fabienne Lambush just defended her Bachelors thesis Classification of Reactions of Computational Models, which she wrote within the SEMS group. She applied graph algorithms to study the reactions of computational models stored in Masymos. As a result, Fabienne was able to identify patterns in reaction networks which will help us to develop a measure for […]
Continue readingCombineArchive Library version 1.0 released
We are happy to announce that version 1.0 of the CombineArchive Library, part of the CombineArchive Toolkit, was just released! Using JUnit tests we achieved a code coverage of about 91.3%, and as it is already integrated in a couple of other tools we assume it to be fairly stable. That said, do not hesitate […]
Continue readingSEMS@HARMONY 2015
The SEMS team is currently in Wittenberg to contribute to the this years HARMONY! :) Our goal is to further improve the development of standard, such as SBML or SED-ML. Moreover, we’re very interested in development of the CombineArchive. We proposed an update to the meta data standard and had a couple of discussions with […]
Continue readingBudHat user management closed
Those of you who have not been notified in advance might have recognized that it is currently not possible to log on to our demo web tool BudHat. Thanks to our faithful BudHat users, we were able to identify some space for improvements in our systems. Thus, we decided to freeze the database while we […]
Continue readingMartin raised Funding for Provenance!
The HERMES Research funding of the University of Rostock gives young researchers the opportunity to develop their own grant proposal: The objective of the Hermes Programme is to promote young academics at the University of Rostock and simultaneously strengthen the international networks of the University of Rostock. Just recently, Martin applied for this research programme! […]
Continue readingProvenanceWeek 2014
Martin is going to attend the ProvenanceWeek 2014 in Cologne, Germany.
Continue readingMartin visits the EBI
In December Martin Scharm is invited to give a talk at the European Bioinformatics Institute.
Continue readingMaven Repository
We are happy to announce that most of our software is now available in our Maven Repository. To use our tools in your application just add the following to your list of repositories and Maven will automagically resolve dependencies.
Continue readingSEMS at the COMBINE 2013
As promised, the SEMS group will participate in the COMBINE meeting 2013!
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